IL_2OGO_113

3D structure

PDB id

2OGO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit from Deinococcus radiodurans complexed with the pleuromutilin derivative retapamulin (SB-275833)

Experimental method

X-RAY DIFFRACTION

Resolution

3.66 Å

Loop

Sequence

GGUUAAG*CGAAAAUGAUCGGGGC

Length

23 nucleotides

Bulged bases

2OGO|1|0|U|1037, 2OGO|1|0|A|1138, 2OGO|1|0|U|1141

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2OGO_113 not in the Motif Atlas

Geometric match to IL_7A0S_037

Geometric discrepancy: 0.1432

The information below is about IL_7A0S_037

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_50715.4

Basepair signature

cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L

Number of instances in this motif group

4

Unit IDs

2OGO|1|0|G|1035
2OGO|1|0|G|1036
2OGO|1|0|U|1037
2OGO|1|0|U|1038
2OGO|1|0|A|1039
2OGO|1|0|A|1040
2OGO|1|0|G|1041
*
2OGO|1|0|C|1135
2OGO|1|0|G|1136
2OGO|1|0|A|1137
2OGO|1|0|A|1138
2OGO|1|0|A|1139
2OGO|1|0|A|1140
2OGO|1|0|U|1141
2OGO|1|0|G|1142
2OGO|1|0|A|1143
2OGO|1|0|U|1144
2OGO|1|0|C|1145
2OGO|1|0|G|1146
2OGO|1|0|G|1147
2OGO|1|0|G|1148
2OGO|1|0|G|1149
2OGO|1|0|C|1150

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain B

50S ribosomal protein L3