IL_2OGO_121

3D structure

PDB id

2OGO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit from Deinococcus radiodurans complexed with the pleuromutilin derivative retapamulin (SB-275833)

Experimental method

X-RAY DIFFRACTION

Resolution

3.66 Å

Loop

Sequence

GGC*GAUC

Length

7 nucleotides

Bulged bases

2OGO|1|0|A|1964

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2OGO_121 not in the Motif Atlas

Geometric match to IL_5J7L_363

Geometric discrepancy: 0.162

The information below is about IL_5J7L_363

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

2OGO|1|0|G|1760
2OGO|1|0|G|1761
2OGO|1|0|C|1762
*
2OGO|1|0|G|1963
2OGO|1|0|A|1964
2OGO|1|0|U|1965
2OGO|1|0|C|1966

Current chains

Chain 0

23S ribosomal RNA

Nearby chains