IL_2OIH_001

3D structure

PDB id

2OIH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hepatitis Delta Virus gemonic ribozyme precursor with C75U mutation and bound to monovalent cation Tl+

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

CAUGGUCCCAG*CG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2OIH_001 not in the Motif Atlas

Geometric match to IL_4PR6_001

Geometric discrepancy: 0.1867

The information below is about IL_4PR6_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_93657.1

Basepair signature

cWW-L-cWW-L-L-R-L-R-L-R-L

Number of instances in this motif group

2

Unit IDs

2OIH|1|B|C|107
2OIH|1|B|A|108
2OIH|1|B|U|109
2OIH|1|B|G|110
2OIH|1|B|G|111
2OIH|1|B|U|112
2OIH|1|B|C|113
2OIH|1|B|C|114
2OIH|1|B|C|115
2OIH|1|B|A|116
2OIH|1|B|G|117
*
2OIH|1|B|C|130
2OIH|1|B|G|131

Current chains

Chain B

HDV ribozyme

Nearby chains