IL_2OIY_001

3D structure

PDB id

2OIY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the duplex form of the HIV-1(LAI) RNA dimerization initiation site

Experimental method

X-RAY DIFFRACTION

Resolution

1.6 Å

Loop

Sequence

GAAG*CAC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_02315.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

103

Unit IDs

2OIY|1|A|G|7
2OIY|1|A|A|8
2OIY|1|A|A|9
2OIY|1|A|G|10
*
2OIY|1|B|C|15
2OIY|1|B|A|16
2OIY|1|B|C|17

Current chains

Chain A

5'-R(*CP*UP*UP*GP*CP*UP*GP*AP*AP*GP*CP*GP*CP*GP*CP*AP*CP*GP*GP*CP*AP*AP*G)-3'

Chain B

5'-R(*CP*UP*UP*GP*CP*UP*GP*AP*AP*GP*CP*GP*CP*GP*CP*AP*CP*GP*GP*CP*AP*AP*G)-3'

Nearby chains