IL_2OJ3_001

3D structure

PDB id

2OJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hepatitis Delta Virus ribozyme precursor structure, with C75U mutation, bound to Tl+ and cobalt hexammine (Co(NH3)63+)

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CAUGGUCCCAG*CG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2OJ3_001 not in the Motif Atlas

Geometric match to IL_4PR6_001

Geometric discrepancy: 0.1936

The information below is about IL_4PR6_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_93657.1

Basepair signature

cWW-L-cWW-L-L-R-L-R-L-R-L

Number of instances in this motif group

2

Unit IDs

2OJ3|1|B|C|107
2OJ3|1|B|A|108
2OJ3|1|B|U|109
2OJ3|1|B|G|110
2OJ3|1|B|G|111
2OJ3|1|B|U|112
2OJ3|1|B|C|113
2OJ3|1|B|C|114
2OJ3|1|B|C|115
2OJ3|1|B|A|116
2OJ3|1|B|G|117
*
2OJ3|1|B|C|130
2OJ3|1|B|G|131

Current chains

Chain B

HDV RIBOZYME

Nearby chains