IL_2OTJ_013

3D structure

PDB id

2OTJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

13-deoxytedanolide bound to the large subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CCGACCG*CCAGUACG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2OTJ_013 not in the Motif Atlas

Homologous match to IL_4V9F_012

Geometric discrepancy: 0.0493

The information below is about IL_4V9F_012

Detailed Annotation

8x7 Sarcin-Ricin with CC bifurcated pair; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_59724.1

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-R-L-cWW

Number of instances in this motif group

1

Unit IDs

2OTJ|1|0|C|290
2OTJ|1|0|C|291
2OTJ|1|0|G|292
2OTJ|1|0|A|293
2OTJ|1|0|C|294
2OTJ|1|0|C|295
2OTJ|1|0|G|296
*
2OTJ|1|0|C|355
2OTJ|1|0|C|356
2OTJ|1|0|A|357
2OTJ|1|0|G|358
2OTJ|1|0|U|359
2OTJ|1|0|A|360
2OTJ|1|0|C|361
2OTJ|1|0|G|362

Current chains

Chain 0

23S ribosomal RNA

Nearby chains