IL_2OTJ_019
3D structure
- PDB id
- 2OTJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 13-deoxytedanolide bound to the large subunit of Haloarcula marismortui
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- ACGAAU*AGACU
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_2OTJ_019 not in the Motif Atlas
- Geometric match to IL_4V9F_018
- Geometric discrepancy: 0.0596
- The information below is about IL_4V9F_018
- Detailed Annotation
- Triple sheared related
- Broad Annotation
- Triple sheared
- Motif group
- IL_67427.1
- Basepair signature
- cWW-cWW-L-R-L-R-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
2OTJ|1|0|A|562
2OTJ|1|0|C|563
2OTJ|1|0|G|564
2OTJ|1|0|A|565
2OTJ|1|0|A|566
2OTJ|1|0|U|567
*
2OTJ|1|0|A|591
2OTJ|1|0|G|592
2OTJ|1|0|A|593
2OTJ|1|0|C|594
2OTJ|1|0|U|595
Current chains
- Chain 0
- 23S ribosomal RNA
Nearby chains
- Chain W
- 50S ribosomal protein L30P
- Chain Y
- 50S ribosomal protein L32e
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