IL_2OTJ_034
3D structure
- PDB id
- 2OTJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 13-deoxytedanolide bound to the large subunit of Haloarcula marismortui
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- GGUAG*CAAAC
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_2OTJ_034 not in the Motif Atlas
- Geometric match to IL_4V9F_033
- Geometric discrepancy: 0.0298
- The information below is about IL_4V9F_033
- Detailed Annotation
- 5x5 Sarcin-Ricin with intercalated A; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_38862.4
- Basepair signature
- cWW-cSH-R-tWH-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
2OTJ|1|0|G|952
2OTJ|1|0|G|953
2OTJ|1|0|U|954
2OTJ|1|0|A|955
2OTJ|1|0|G|956
*
2OTJ|1|0|C|1011
2OTJ|1|0|A|1012
2OTJ|1|0|A|1013
2OTJ|1|0|A|1014
2OTJ|1|0|C|1015
Current chains
- Chain 0
- 23S ribosomal RNA
Nearby chains
- Chain 9
- 5S ribosomal RNA; 5S rRNA
- Chain H
- 50S ribosomal protein L10e
- Chain N
- 50S ribosomal protein L18P
- Chain Q
- 50S ribosomal protein L21e
- Chain W
- 50S ribosomal protein L30P
Coloring options: