IL_2OTJ_038

3D structure

PDB id

2OTJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

13-deoxytedanolide bound to the large subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

UUAAG*CGAGA

Length

10 nucleotides

Bulged bases

2OTJ|1|0|G|1260

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2OTJ_038 not in the Motif Atlas

Homologous match to IL_4V9F_037

Geometric discrepancy: 0.0484

The information below is about IL_4V9F_037

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_08938.1

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

22

Unit IDs

2OTJ|1|0|U|1095
2OTJ|1|0|U|1096
2OTJ|1|0|A|1097
2OTJ|1|0|A|1098
2OTJ|1|0|G|1099
*
2OTJ|1|0|C|1257
2OTJ|1|0|G|1258
2OTJ|1|0|A|1259
2OTJ|1|0|G|1260
2OTJ|1|0|A|1261

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain 9

5S ribosomal RNA; 5S rRNA

Chain W

50S ribosomal protein L30P

Chain Y

50S ribosomal protein L32e