IL_08938.1

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name for chain		1		2		3		4		5	break		6		7		8		9	1-9	2-8	3-7	4-7	5-6
1	IL_9DFE_025	9DFE	0.9039	0	Stack outside cWW	1A	LSU rRNA	C	846	U	847	G	848	A	849	C	850	*	G	927	G	928	U	930	G	931	cWW			tHS	cWW
2	IL_8P9A_291	8P9A	0.2860	2	UAA/GAN	AR	LSU rRNA	C	1532	U	1533	A	1534	A	1535	G	1536	*	C	1585	G	1586	A	1587	G	1590	cWW	tWH		tHS	cWW
3	IL_8OI5_064	8OI5	0.2527	2	UAA/GAN (H)	1	LSU rRNA	C	1528	U	1529	A	1530	A	1531	G	1532	*	C	1581	G	1582	A	1583	G	1586	cWW	tWH		tHS	cWW
4	IL_9AXU_060	9AXU	0.2622	2	UAA/GAN (H)	2	LSU rRNA	C	1566	U	1567	A	1568	A	1569	G	1570	*	C	1620	G	1621	A	1622	G	1625	cWW	tWH		tHS	cWW
5	IL_9E6Q_054	9E6Q	0.2581	2		1	LSU rRNA	C	1479	U	1480	A	1481	A	1482	G	1483	*	C	1506	G	1507	A	1508	G	1511	cWW	tWH		tHS	cWW
6	IL_8GLP_091	8GLP	0.2776	2	UAA/GAN (H)	L5	LSU rRNA	C	2446	U	2447	G	2448	A	2449	G	2450	*	C	2509	G	2510	A	2511	G	2514	cWW	tWH		tHS	cWW
7	IL_9DFE_051	9DFE	0.1810	1	UAA/GAN	1A	LSU rRNA	C	1351	U	1352	A	1353	A	1354	G	1355	*	C	1376	G	1377	A	1378	G	1380	cWW	tWH		tHS	cWW
8	IL_9DFE_054	9DFE	0.1800	1	UAA/GAN	1A	LSU rRNA	C	1577	U	1578	A	1579	A	1580	G	1581	*	C	1417	G	1418	A	1419	G	1421	cWW	tWH		tHS	cWW
9	IL_8B0X_114	8B0X	0.1540	1	UAA/GAN (H)	a	LSU rRNA	C	1579	U	1580	A	1581	A	1582	G	1583	*	C	1419	G	1420	A	1421	G	1423	cWW	tWH		tHS	cWW
10	IL_7A0S_033	7A0S	0.0000	1	UAA/GAN	X	LSU rRNA	C	1009	U	1010	A	1011	A	1012	G	1013	*	C	1164	G	1165	A	1166	G	1168	cWW	tWH		tHS	cWW
11	IL_8B0X_097	8B0X	0.0784	1	UAA/GAN (H)	a	LSU rRNA	C	1000	U	1001	A	1002	A	1003	G	1004	*	C	1155	G	1156	A	1157	G	1159	cWW	tWH		tHS	cWW
12	IL_4WF9_036	4WF9	0.0911	1	UAA/GAN	X	LSU rRNA	C	1042	U	1043	A	1044	A	1045	G	1046	*	C	1197	G	1198	A	1199	G	1201	cWW	tWH		tHS	cWW
13	IL_9DFE_035	9DFE	0.1020	1	UAA/GAN	1A	LSU rRNA	C	998	U	999	A	1000	A	1001	G	1002	*	C	1153	G	1154	A	1155	G	1157	cWW	tWH		tHS	cWW
14	IL_4V9F_037	4V9F	0.1127	1	UAA/GAN	0	LSU rRNA	U	1095	U	1096	A	1097	A	1098	G	1099	*	C	1257	G	1258	A	1259	A	1261	cWW	tWH		tHS	cWW
15	IL_9E6Q_042	9E6Q	0.1019	1	UAA/GAN (H)	1	LSU rRNA	U	1118	U	1119	A	1120	A	1121	G	1122	*	C	1279	G	1280	A	1281	A	1283	cWW	tWH		tHS	cWW
16	IL_8P9A_348	8P9A	0.1762	1	UAA/GAN	AR	LSU rRNA	A	3103	U	3104	U	3105	A	3106	U	3107	*	A	3127	G	3128	A	3129	U	3131	cWW	tWH		tHS	cWW
17	IL_8OI5_120	8OI5	0.1780	1	UAA/GAN (H)	1	LSU rRNA	A	3075	U	3076	U	3077	A	3078	U	3079	*	A	3099	G	3100	A	3101	U	3103	cWW	tWH		tHS	cWW
18	IL_9AXU_045	9AXU	0.1893	1	UAA/GAN (H)	2	LSU rRNA	U	1198	U	1199	A	1200	A	1201	G	1202	*	C	1359	C	1360	A	1361	A	1363	cWW	tWH	ntHW		cWW
19	IL_8GLP_075	8GLP	0.2120	1	UAA/GAN (H)	L5	LSU rRNA	U	1905	U	1906	A	1907	A	1908	G	1909	*	C	2067	C	2068	A	2069	A	2071	cWW	tWH	ntHW		cWW
20	IL_8P9A_276	8P9A	0.2130	1	UAA/GAN	AR	LSU rRNA	U	1167	U	1168	A	1169	A	1170	G	1171	*	C	1328	U	1329	A	1330	A	1332	cWW	tWH	ntHW		cWW
21	IL_8OI5_051	8OI5	0.1950	1	UAA/GAN (H)	1	LSU rRNA	U	1163	U	1164	A	1165	A	1166	A	1167	*	U	1324	U	1325	A	1326	A	1328	cWW	tWH	ntHW		cWW
22	IL_7A0S_051	7A0S	0.5069	1	UAA/GAN	X	LSU rRNA	C	1593	U	1594	A	1595	A	1596	A	1597	*	U	1431	G	1432	A	1433	G	1435		ntWH			cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
CUAAG*CGAAG	6
CUAAG*CGAAAG	4
UUAAG*CGAGA	2
AUUAU*AGAAU	2
UUAAG*CCAUA	2
CUGAC*GGUG	1
CUGAG*CGAAAG	1
CUAAG*CGAUG	1
UUAAG*CUAUA	1
UUAAA*UUAUA	1
CUAAA*UGAUG	1

Non-Watson-Crick part of the motif

Sequence	Counts
UAA*GAA	6
UAA*GAAA	4
UAA*GAU	2
UAA*GAG	2
UUA*GAA	2
UAA*CAU	2
UAA*UAU	2
UGA*GU	1
UGA*GAAA	1

Release history

Release	4.0
Date	2025-08-13
Status	New id, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Motif IL_08938.1 Version IL_08938.1 of this group appears in releases 4.0 to 4.0 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif IL_08938.1 Version IL_08938.1 of this group appears in releases 4.0 to 4.0

Download

Csv

Json