IL_2OTJ_041
3D structure
- PDB id
- 2OTJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 13-deoxytedanolide bound to the large subunit of Haloarcula marismortui
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- UUAAGUG*CUCAAA
- Length
- 13 nucleotides
- Bulged bases
- 2OTJ|1|0|C|1245, 2OTJ|1|0|A|1247
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_2OTJ_041 not in the Motif Atlas
- Homologous match to IL_4V9F_040
- Geometric discrepancy: 0.1447
- The information below is about IL_4V9F_040
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_57188.6
- Basepair signature
- cWW-tWW-L-tWW-cWW-cSH
- Number of instances in this motif group
- 6
Unit IDs
2OTJ|1|0|U|1115
2OTJ|1|0|U|1116
2OTJ|1|0|A|1117
2OTJ|1|0|A|1118
2OTJ|1|0|G|1119
2OTJ|1|0|U|1120
2OTJ|1|0|G|1121
*
2OTJ|1|0|C|1243
2OTJ|1|0|U|1244
2OTJ|1|0|C|1245
2OTJ|1|0|A|1246
2OTJ|1|0|A|1247
2OTJ|1|0|A|1248
Current chains
- Chain 0
- 23S ribosomal RNA
Nearby chains
- Chain E
- 50S ribosomal protein L6P
- Chain J
- 50S ribosomal protein L13P
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