IL_2OTJ_076

3D structure

PDB id

2OTJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

13-deoxytedanolide bound to the large subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CAG*CGGG

Length

7 nucleotides

Bulged bases

2OTJ|1|0|G|2271

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2OTJ_076 not in the Motif Atlas

Homologous match to IL_4V9F_076

Geometric discrepancy: 0.0575

The information below is about IL_4V9F_076

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_87316.1

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

12

Unit IDs

2OTJ|1|0|C|2122
2OTJ|1|0|A|2123
2OTJ|1|0|G|2124
*
2OTJ|1|0|C|2269
2OTJ|1|0|G|2270
2OTJ|1|0|G|2271
2OTJ|1|0|G|2272

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain 3

50S ribosomal protein L44E

Chain A

50S ribosomal protein L2P

Chain M

50S ribosomal protein L15e