IL_2OTJ_094
3D structure
- PDB id
- 2OTJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 13-deoxytedanolide bound to the large subunit of Haloarcula marismortui
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- GGUAAG*CGAAAC
- Length
- 12 nucleotides
- Bulged bases
- 2OTJ|1|0|A|2800
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_2OTJ_094 not in the Motif Atlas
- Geometric match to IL_5J7L_350
- Geometric discrepancy: 0.1756
- The information below is about IL_5J7L_350
- Detailed Annotation
- UAA/GAN with extra cWW
- Broad Annotation
- No text annotation
- Motif group
- IL_49767.8
- Basepair signature
- cWW-cWW-tWH-L-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
2OTJ|1|0|G|2772
2OTJ|1|0|G|2773
2OTJ|1|0|U|2774
2OTJ|1|0|A|2775
2OTJ|1|0|A|2776
2OTJ|1|0|G|2777
*
2OTJ|1|0|C|2797
2OTJ|1|0|G|2798
2OTJ|1|0|A|2799
2OTJ|1|0|A|2800
2OTJ|1|0|A|2801
2OTJ|1|0|C|2802
Current chains
- Chain 0
- 23S ribosomal RNA
Nearby chains
- Chain E
- 50S ribosomal protein L6P
- Chain J
- 50S ribosomal protein L13P
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