IL_2OTJ_106

3D structure

PDB id

2OTJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

13-deoxytedanolide bound to the large subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CCUCG*CACGG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2OTJ_106 not in the Motif Atlas

Geometric match to IL_7VYX_004

Geometric discrepancy: 0.321

The information below is about IL_7VYX_004

Detailed Annotation

Partly complementary

Broad Annotation

Partly complementary

Motif group

IL_71154.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

17

Unit IDs

2OTJ|1|0|C|557
2OTJ|1|0|C|558
2OTJ|1|0|U|559
2OTJ|1|0|C|560
2OTJ|1|0|G|561
*
2OTJ|1|0|C|596
2OTJ|1|0|A|597
2OTJ|1|0|C|598
2OTJ|1|0|G|599
2OTJ|1|0|G|600

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain Y

50S ribosomal protein L32e