IL_2OTL_013

3D structure

PDB id

2OTL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Girodazole bound to the large subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CCGACCG*CCAGUACG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2OTL_013 not in the Motif Atlas

Homologous match to IL_4V9F_012

Geometric discrepancy: 0.0591

The information below is about IL_4V9F_012

Detailed Annotation

8x7 Sarcin-Ricin with CC bifurcated pair; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_59724.1

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-R-L-cWW

Number of instances in this motif group

1

Unit IDs

2OTL|1|0|C|290
2OTL|1|0|C|291
2OTL|1|0|G|292
2OTL|1|0|A|293
2OTL|1|0|C|294
2OTL|1|0|C|295
2OTL|1|0|G|296
*
2OTL|1|0|C|355
2OTL|1|0|C|356
2OTL|1|0|A|357
2OTL|1|0|G|358
2OTL|1|0|U|359
2OTL|1|0|A|360
2OTL|1|0|C|361
2OTL|1|0|G|362

Current chains

Chain 0

23S ribosomal RNA

Nearby chains