IL_2OTL_020

3D structure

PDB id

2OTL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Girodazole bound to the large subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

UGACCG*CCAGUAA

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2OTL_020 not in the Motif Atlas

Geometric match to IL_4V9F_019

Geometric discrepancy: 0.0497

The information below is about IL_4V9F_019

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.6

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

6

Unit IDs

2OTL|1|0|U|567
2OTL|1|0|G|568
2OTL|1|0|A|569
2OTL|1|0|C|570
2OTL|1|0|C|571
2OTL|1|0|G|572
*
2OTL|1|0|C|585
2OTL|1|0|C|586
2OTL|1|0|A|587
2OTL|1|0|G|588
2OTL|1|0|U|589
2OTL|1|0|A|590
2OTL|1|0|A|591

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain W

50S ribosomal protein L30P