IL_2OTL_044

3D structure

PDB id

2OTL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Girodazole bound to the large subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

GUGAG*CUACC

Length

10 nucleotides

Bulged bases

2OTL|1|0|G|1165

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2OTL_044 not in the Motif Atlas

Homologous match to IL_4V9F_043

Geometric discrepancy: 0.1368

The information below is about IL_4V9F_043

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_30542.3

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

4

Unit IDs

2OTL|1|0|G|1163
2OTL|1|0|U|1164
2OTL|1|0|G|1165
2OTL|1|0|A|1166
2OTL|1|0|G|1167
*
2OTL|1|0|C|1179
2OTL|1|0|U|1180
2OTL|1|0|A|1181
2OTL|1|0|C|1182
2OTL|1|0|C|1183

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain I

50S ribosomal protein L11P