IL_2OTL_058

3D structure

PDB id

2OTL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Girodazole bound to the large subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

UGGAAG*CAGGAAG

Length

13 nucleotides

Bulged bases

2OTL|1|0|G|1604

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2OTL_058 not in the Motif Atlas

Homologous match to IL_4V9F_058

Geometric discrepancy: 0.06

The information below is about IL_4V9F_058

Detailed Annotation

Kink-turn

Broad Annotation

Kink-turn

Motif group

IL_32016.1

Basepair signature

cWW-tSH-tSH-tSS-tHS-L-R-cWW

Number of instances in this motif group

1

Unit IDs

2OTL|1|0|U|1587
2OTL|1|0|G|1588
2OTL|1|0|G|1589
2OTL|1|0|A|1590
2OTL|1|0|A|1591
2OTL|1|0|G|1592
*
2OTL|1|0|C|1602
2OTL|1|0|A|1603
2OTL|1|0|G|1604
2OTL|1|0|G|1605
2OTL|1|0|A|1606
2OTL|1|0|A|1607
2OTL|1|0|G|1608

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain P

50S ribosomal protein L19e

Chain Z

50S ribosomal protein L37Ae