IL_2OTL_065

3D structure

PDB id

2OTL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Girodazole bound to the large subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CGCAAAU*ACUCGUACG

Length

16 nucleotides

Bulged bases

2OTL|1|0|A|1857, 2OTL|1|0|C|1872, 2OTL|1|0|C|1876

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2OTL_065 not in the Motif Atlas

Homologous match to IL_4V9F_065

Geometric discrepancy: 0.0331

The information below is about IL_4V9F_065

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.6

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

2OTL|1|0|C|1854
2OTL|1|0|G|1855
2OTL|1|0|C|1856
2OTL|1|0|A|1857
2OTL|1|0|A|1858
2OTL|1|0|A|1859
2OTL|1|0|U|1860
*
2OTL|1|0|A|1869
2OTL|1|0|C|1870
2OTL|1|0|U|1871
2OTL|1|0|C|1872
2OTL|1|0|G|1873
2OTL|1|0|U|1874
2OTL|1|0|A|1875
2OTL|1|0|C|1876
2OTL|1|0|G|1877

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain A

50S ribosomal protein L2P

Chain Z

50S ribosomal protein L37Ae