IL_2OTL_071

3D structure

PDB id

2OTL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Girodazole bound to the large subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CGUAGUACCUUG*CUUG

Length

16 nucleotides

Bulged bases

2OTL|1|0|G|1979, 2OTL|1|0|U|1985, 2OTL|1|0|U|2004

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2OTL_071 not in the Motif Atlas

Geometric match to IL_4V9F_071

Geometric discrepancy: 0.0509

The information below is about IL_4V9F_071

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_04332.3

Basepair signature

cWW-L-R-L-cWW-L-L-R-L-R-L

Number of instances in this motif group

2

Unit IDs

2OTL|1|0|C|1975
2OTL|1|0|G|1976
2OTL|1|0|U|1977
2OTL|1|0|A|1978
2OTL|1|0|G|1979
2OTL|1|0|U|1980
2OTL|1|0|A|1981
2OTL|1|0|C|1982
2OTL|1|0|C|1983
2OTL|1|0|U|1984
2OTL|1|0|U|1985
2OTL|1|0|G|1986
*
2OTL|1|0|C|2002
2OTL|1|0|U|2003
2OTL|1|0|U|2004
2OTL|1|0|G|2005

Current chains

Chain 0

23S ribosomal RNA

Nearby chains