IL_2OTL_100
3D structure
- PDB id
- 2OTL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Girodazole bound to the large subunit of Haloarcula marismortui
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.7 Å
Loop
- Sequence
- GGUUGCCU*AUAAGC
- Length
- 14 nucleotides
- Bulged bases
- 2OTL|1|9|U|3023, 2OTL|1|9|U|3024
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_2OTL_100 not in the Motif Atlas
- Homologous match to IL_4V9F_102
- Geometric discrepancy: 0.581
- The information below is about IL_4V9F_102
- Detailed Annotation
- Minor groove platform related
- Broad Annotation
- No text annotation
- Motif group
- IL_67623.1
- Basepair signature
- cWW-tSW-cSW-L-cSW-L-R-L-cWW-cWW
- Number of instances in this motif group
- 1
Unit IDs
2OTL|1|9|G|3021
2OTL|1|9|G|3022
2OTL|1|9|U|3023
2OTL|1|9|U|3024
2OTL|1|9|G|3025
2OTL|1|9|C|3026
2OTL|1|9|C|3027
2OTL|1|9|U|3028
*
2OTL|1|9|A|3054
2OTL|1|9|U|3055
2OTL|1|9|A|3056
2OTL|1|9|A|3057
2OTL|1|9|G|3058
2OTL|1|9|C|3059
Current chains
- Chain 9
- 5S ribosomal RNA
Nearby chains
- Chain D
- 50S ribosomal protein L5P
- Chain N
- 50S ribosomal protein L18P
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