IL_2PLY_002

3D structure

PDB id

2PLY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mRNA binding fragment of elongation factor SelB in complex with SECIS RNA.

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CG*CUG

Length

5 nucleotides

Bulged bases (A, C, G, U)

26U

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_48256.2

Basepair signature

cWW-cWW

Number of instances in this motif group

371

Unit IDs

2PLY|1|E|C|21
2PLY|1|E|G|22
*
2PLY|1|E|C|25
2PLY|1|E|U|26
2PLY|1|E|G|27

Current chains

Chain E

RNA (5'-R(*GP*GP*CP*GP*UP*UP*GP*CP*CP*GP*GP*UP*CP*UP*GP*GP*CP*AP*AP*CP*GP*CP*C)-3')

Nearby chains

Chain A

Selenocysteine-specific elongation factor

Chain B

Selenocysteine-specific elongation factor