IL_2QA4_006
3D structure
- PDB id
- 2QA4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- A more complete structure of the the L7/L12 stalk of the Haloarcula marismortui 50S large ribosomal subunit
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- GAGAACUG*CUCAGUAUC
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_2QA4_006 not in the Motif Atlas
- Geometric match to IL_4WF9_008
- Geometric discrepancy: 0.1004
- The information below is about IL_4WF9_008
- Detailed Annotation
- 9x8 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_93502.1
- Basepair signature
- cWW-L-R-tSH-tHW-tHH-tHS-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
2QA4|1|0|G|157
2QA4|1|0|A|158
2QA4|1|0|G|159
2QA4|1|0|A|160
2QA4|1|0|A|161
2QA4|1|0|C|162
2QA4|1|0|U|163
2QA4|1|0|G|164
*
2QA4|1|0|C|171
2QA4|1|0|U|172
2QA4|1|0|C|173
2QA4|1|0|A|174
2QA4|1|0|G|175
2QA4|1|0|U|176
2QA4|1|0|A|177
2QA4|1|0|U|178
2QA4|1|0|C|179
Current chains
- Chain 0
- 23S RIBOSOMAL RNA
Nearby chains
- Chain 1
- 50S ribosomal protein L37e
- Chain 3
- 50S ribosomal protein L44E
- Chain L
- 50S ribosomal protein L15P
- Chain M
- 50S ribosomal protein L15e
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