IL_4WF9_008

3D structure

PDB id

4WF9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with telithromycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.43 Å

Loop

Sequence

GAGAACUG*CUUAGUACC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

9x8 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_84694.2

Basepair signature

cWW-L-R-tSH-tHW-tHH-tHS-cWW-cWW

Number of instances in this motif group

3

Unit IDs

4WF9|1|X|G|190
4WF9|1|X|A|191
4WF9|1|X|G|192
4WF9|1|X|A|193
4WF9|1|X|A|194
4WF9|1|X|C|195
4WF9|1|X|U|196
4WF9|1|X|G|197
*
4WF9|1|X|C|204
4WF9|1|X|U|205
4WF9|1|X|U|206
4WF9|1|X|A|207
4WF9|1|X|G|208
4WF9|1|X|U|209
4WF9|1|X|A|210
4WF9|1|X|C|211
4WF9|1|X|C|212

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L34

Chain 3

50S ribosomal protein L35

Chain I

50S ribosomal protein L15