IL_2QA4_038

3D structure

PDB id

2QA4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

A more complete structure of the the L7/L12 stalk of the Haloarcula marismortui 50S large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UUAAG*CGAGA

Length

10 nucleotides

Bulged bases

2QA4|1|0|G|1260

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2QA4_038 not in the Motif Atlas

Homologous match to IL_4V9F_037

Geometric discrepancy: 0.0725

The information below is about IL_4V9F_037

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_08938.1

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

22

Unit IDs

2QA4|1|0|U|1095
2QA4|1|0|U|1096
2QA4|1|0|A|1097
2QA4|1|0|A|1098
2QA4|1|0|G|1099
*
2QA4|1|0|C|1257
2QA4|1|0|G|1258
2QA4|1|0|A|1259
2QA4|1|0|G|1260
2QA4|1|0|A|1261

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain 9

5S ribosomal RNA; 5S rRNA

Chain W

50S ribosomal protein L30P

Chain Y

50S ribosomal protein L32e