IL_2QA4_039

3D structure

PDB id

2QA4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

A more complete structure of the the L7/L12 stalk of the Haloarcula marismortui 50S large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UCCCCAAG*CA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2QA4_039 not in the Motif Atlas

Geometric match to IL_4V9F_038

Geometric discrepancy: 0.0673

The information below is about IL_4V9F_038

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_11411.1

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

12

Unit IDs

2QA4|1|0|U|1101
2QA4|1|0|C|1102
2QA4|1|0|C|1103
2QA4|1|0|C|1104
2QA4|1|0|C|1105
2QA4|1|0|A|1106
2QA4|1|0|A|1107
2QA4|1|0|G|1108
*
2QA4|1|0|C|1254
2QA4|1|0|A|1255

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain J

50S ribosomal protein L13P

Chain W

50S ribosomal protein L30P