IL_2QA4_041

3D structure

PDB id

2QA4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

A more complete structure of the the L7/L12 stalk of the Haloarcula marismortui 50S large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UUAAGUG*CUCAAA

Length

13 nucleotides

Bulged bases

2QA4|1|0|C|1245

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2QA4_041 not in the Motif Atlas

Homologous match to IL_4V9F_040

Geometric discrepancy: 0.1568

The information below is about IL_4V9F_040

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.6

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

6

Unit IDs

2QA4|1|0|U|1115
2QA4|1|0|U|1116
2QA4|1|0|A|1117
2QA4|1|0|A|1118
2QA4|1|0|G|1119
2QA4|1|0|U|1120
2QA4|1|0|G|1121
*
2QA4|1|0|C|1243
2QA4|1|0|U|1244
2QA4|1|0|C|1245
2QA4|1|0|A|1246
2QA4|1|0|A|1247
2QA4|1|0|A|1248

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain E

50S ribosomal protein L6P

Chain J

50S ribosomal protein L13P