IL_2QA4_054

3D structure

PDB id

2QA4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

A more complete structure of the the L7/L12 stalk of the Haloarcula marismortui 50S large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CAGUGAAAG*CGAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2QA4_054 not in the Motif Atlas

Homologous match to IL_4V9F_054

Geometric discrepancy: 0.144

The information below is about IL_4V9F_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_41853.1

Basepair signature

cWW-L-tHH-L-tHS-L-cWW-L-L

Number of instances in this motif group

1

Unit IDs

2QA4|1|0|C|1521
2QA4|1|0|A|1522
2QA4|1|0|G|1523
2QA4|1|0|U|1524
2QA4|1|0|G|1525
2QA4|1|0|A|1526
2QA4|1|0|A|1527
2QA4|1|0|A|1528
2QA4|1|0|G|1529
*
2QA4|1|0|C|1662
2QA4|1|0|G|1663
2QA4|1|0|A|1664
2QA4|1|0|G|1665

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain A

50S ribosomal protein L2P