IL_2QA4_059

3D structure

PDB id

2QA4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

A more complete structure of the the L7/L12 stalk of the Haloarcula marismortui 50S large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UGGAAG*CAGGAAG

Length

13 nucleotides

Bulged bases

2QA4|1|0|G|1604

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2QA4_059 not in the Motif Atlas

Homologous match to IL_4V9F_058

Geometric discrepancy: 0.0952

The information below is about IL_4V9F_058

Detailed Annotation

Kink-turn

Broad Annotation

Kink-turn

Motif group

IL_32016.1

Basepair signature

cWW-tSH-tSH-tSS-tHS-L-R-cWW

Number of instances in this motif group

1

Unit IDs

2QA4|1|0|U|1587
2QA4|1|0|G|1588
2QA4|1|0|G|1589
2QA4|1|0|A|1590
2QA4|1|0|A|1591
2QA4|1|0|G|1592
*
2QA4|1|0|C|1602
2QA4|1|0|A|1603
2QA4|1|0|G|1604
2QA4|1|0|G|1605
2QA4|1|0|A|1606
2QA4|1|0|A|1607
2QA4|1|0|G|1608

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain P

50S ribosomal protein L19e

Chain Z

50S ribosomal protein L37Ae