IL_2QA4_060

3D structure

PDB id

2QA4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

A more complete structure of the the L7/L12 stalk of the Haloarcula marismortui 50S large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GAGCAAC*GGC

Length

10 nucleotides

Bulged bases

2QA4|1|0|G|1730

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2QA4_060 not in the Motif Atlas

Homologous match to IL_4V9F_059

Geometric discrepancy: 0.0861

The information below is about IL_4V9F_059

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_12566.5

Basepair signature

cWW-L-tHS-L-cWW-L

Number of instances in this motif group

6

Unit IDs

2QA4|1|0|G|1728
2QA4|1|0|A|1729
2QA4|1|0|G|1730
2QA4|1|0|C|1731
2QA4|1|0|A|1732
2QA4|1|0|A|1733
2QA4|1|0|C|1734
*
2QA4|1|0|G|2045
2QA4|1|0|G|2046
2QA4|1|0|C|2047

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain B

50S ribosomal protein L3P

Chain R

50S ribosomal protein L22P

Chain X

50S RIBOSOMAL PROTEIN L31E