IL_2QA4_063

3D structure

PDB id

2QA4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

A more complete structure of the the L7/L12 stalk of the Haloarcula marismortui 50S large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CGUACC*GAAGAAG

Length

13 nucleotides

Bulged bases

2QA4|1|0|G|1777

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2QA4_063 not in the Motif Atlas

Geometric match to IL_4V9F_063

Geometric discrepancy: 0.0818

The information below is about IL_4V9F_063

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_20700.1

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

10

Unit IDs

2QA4|1|0|C|1764
2QA4|1|0|G|1765
2QA4|1|0|U|1766
2QA4|1|0|A|1767
2QA4|1|0|C|1768
2QA4|1|0|C|1769
*
2QA4|1|0|G|1774
2QA4|1|0|A|1775
2QA4|1|0|A|1776
2QA4|1|0|G|1777
2QA4|1|0|A|1778
2QA4|1|0|A|1779
2QA4|1|0|G|1780

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain P

50S ribosomal protein L19e

Chain Z

50S ribosomal protein L37Ae