IL_2QA4_069

3D structure

PDB id

2QA4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

A more complete structure of the the L7/L12 stalk of the Haloarcula marismortui 50S large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UGAACAC*GACGAAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2QA4_069 not in the Motif Atlas

Homologous match to IL_4V9F_069

Geometric discrepancy: 0.1481

The information below is about IL_4V9F_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65359.1

Basepair signature

cWW-tSH-L-R-L-R-L-R-cWW-cWW

Number of instances in this motif group

4

Unit IDs

2QA4|1|0|U|1907
2QA4|1|0|G|1908
2QA4|1|0|A|1909
2QA4|1|0|A|1910
2QA4|1|0|C|1911
2QA4|1|0|A|1912
2QA4|1|0|C|1913
*
2QA4|1|0|G|1926
2QA4|1|0|A|1927
2QA4|1|0|C|1928
2QA4|1|0|G|1929
2QA4|1|0|A|1930
2QA4|1|0|A|1931
2QA4|1|0|G|1932

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain 3

50S ribosomal protein L44E

Chain A

50S ribosomal protein L2P