IL_2QA4_071

3D structure

PDB id

2QA4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

A more complete structure of the the L7/L12 stalk of the Haloarcula marismortui 50S large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CGUAGUACCUUG*CUUG

Length

16 nucleotides

Bulged bases

2QA4|1|0|G|1979, 2QA4|1|0|U|1985, 2QA4|1|0|U|2004

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2QA4_071 not in the Motif Atlas

Geometric match to IL_4V9F_071

Geometric discrepancy: 0.0798

The information below is about IL_4V9F_071

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_04332.3

Basepair signature

cWW-L-R-L-cWW-L-L-R-L-R-L

Number of instances in this motif group

2

Unit IDs

2QA4|1|0|C|1975
2QA4|1|0|G|1976
2QA4|1|0|U|1977
2QA4|1|0|A|1978
2QA4|1|0|G|1979
2QA4|1|0|U|1980
2QA4|1|0|A|1981
2QA4|1|0|C|1982
2QA4|1|0|C|1983
2QA4|1|0|U|1984
2QA4|1|0|U|1985
2QA4|1|0|G|1986
*
2QA4|1|0|C|2002
2QA4|1|0|U|2003
2QA4|1|0|U|2004
2QA4|1|0|G|2005

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains