IL_2QA4_090

3D structure

PDB id

2QA4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

A more complete structure of the the L7/L12 stalk of the Haloarcula marismortui 50S large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CUGAC*GGAAAAGAG

Length

14 nucleotides

Bulged bases

2QA4|1|0|G|2815

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2QA4_090 not in the Motif Atlas

Geometric match to IL_4WF9_099

Geometric discrepancy: 0.2621

The information below is about IL_4WF9_099

Detailed Annotation

tSH-tHS-tHW

Broad Annotation

tSH-tHS-tHW

Motif group

IL_04638.4

Basepair signature

cWW-tSH-tHW-tHS-L-cWW-L-L

Number of instances in this motif group

6

Unit IDs

2QA4|1|0|C|2672
2QA4|1|0|U|2673
2QA4|1|0|G|2674
2QA4|1|0|A|2675
2QA4|1|0|C|2676
*
2QA4|1|0|G|2809
2QA4|1|0|G|2810
2QA4|1|0|A|2811
2QA4|1|0|A|2812
2QA4|1|0|A|2813
2QA4|1|0|A|2814
2QA4|1|0|G|2815
2QA4|1|0|A|2816
2QA4|1|0|G|2817

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain B

50S ribosomal protein L3P

Chain J

50S ribosomal protein L13P