IL_2QA4_115

3D structure

PDB id

2QA4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

A more complete structure of the the L7/L12 stalk of the Haloarcula marismortui 50S large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

ACGAAU*AGACU

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2QA4_115 not in the Motif Atlas

Homologous match to IL_4V9F_018

Geometric discrepancy: 0.1042

The information below is about IL_4V9F_018

Detailed Annotation

Triple sheared related

Broad Annotation

Triple sheared

Motif group

IL_67427.1

Basepair signature

cWW-cWW-L-R-L-R-cWW-cWW

Number of instances in this motif group

2

Unit IDs

2QA4|1|0|A|562
2QA4|1|0|C|563
2QA4|1|0|G|564
2QA4|1|0|A|565
2QA4|1|0|A|566
2QA4|1|0|U|567
*
2QA4|1|0|A|591
2QA4|1|0|G|592
2QA4|1|0|A|593
2QA4|1|0|C|594
2QA4|1|0|U|595

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain W

50S ribosomal protein L30P

Chain Y

50S ribosomal protein L32e