IL_2QBZ_006

3D structure

PDB id

2QBZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the M-Box Riboswitch Aptamer Domain

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

AAAAAU*GCCAAU

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2QBZ_006 not in the Motif Atlas

Geometric match to IL_4QLM_002

Geometric discrepancy: 0.203

The information below is about IL_4QLM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_55953.3

Basepair signature

cWW-tSH-tHS-R-L-L-R-cWW

Number of instances in this motif group

4

Unit IDs

2QBZ|1|X|A|60
2QBZ|1|X|A|61
2QBZ|1|X|A|62
2QBZ|1|X|A|63
2QBZ|1|X|A|64
2QBZ|1|X|U|65
*
2QBZ|1|X|G|76
2QBZ|1|X|C|77
2QBZ|1|X|C|78
2QBZ|1|X|A|79
2QBZ|1|X|A|80
2QBZ|1|X|U|81

Current chains

Chain X

M-Box RNA, ykoK riboswitch aptamer

Nearby chains