IL_2QEK_001

3D structure

PDB id

2QEK (explore in PDB, NAKB, or RNA 3D Hub)

Description

HIV-1 subtype F DIS RNA extended duplex form

Experimental method

X-RAY DIFFRACTION

Resolution

1.8 Å

Loop

Sequence

GAAG*CAC

Length

7 nucleotides

Bulged bases

2QEK|1|A|A|9

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_92602.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

321

Unit IDs

2QEK|1|A|G|7
2QEK|1|A|A|8
2QEK|1|A|A|9
2QEK|1|A|G|10
*
2QEK|1|B|C|15
2QEK|1|B|A|16
2QEK|1|B|C|17

Current chains

Chain A

HIV-1 subtype F DIS genomic RNA

Chain B

HIV-1 subtype F DIS genomic RNA

Nearby chains