IL_2QEX_055

3D structure

PDB id

2QEX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Negamycin Binds to the Wall of the Nascent Chain Exit Tunnel of the 50S Ribosomal Subunit

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GGUCG*UCAAC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2QEX_055 not in the Motif Atlas

Homologous match to IL_4V9F_055

Geometric discrepancy: 0.0506

The information below is about IL_4V9F_055

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_05821.1

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

17

Unit IDs

2QEX|1|0|G|1542
2QEX|1|0|G|1543
2QEX|1|0|U|1544
2QEX|1|0|C|1545
2QEX|1|0|G|1546
*
2QEX|1|0|U|1639
2QEX|1|0|C|1640
2QEX|1|0|A|1641
2QEX|1|0|A|1642
2QEX|1|0|C|1643

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain P

50S ribosomal protein L19e