IL_2QEX_063

3D structure

PDB id

2QEX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Negamycin Binds to the Wall of the Nascent Chain Exit Tunnel of the 50S Ribosomal Subunit

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CGUACC*GAAGAAG

Length

13 nucleotides

Bulged bases

2QEX|1|0|G|1777

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2QEX_063 not in the Motif Atlas

Geometric match to IL_4V9F_063

Geometric discrepancy: 0.0483

The information below is about IL_4V9F_063

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_20700.1

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

10

Unit IDs

2QEX|1|0|C|1764
2QEX|1|0|G|1765
2QEX|1|0|U|1766
2QEX|1|0|A|1767
2QEX|1|0|C|1768
2QEX|1|0|C|1769
*
2QEX|1|0|G|1774
2QEX|1|0|A|1775
2QEX|1|0|A|1776
2QEX|1|0|G|1777
2QEX|1|0|A|1778
2QEX|1|0|A|1779
2QEX|1|0|G|1780

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain P

50S ribosomal protein L19e

Chain Z

50S ribosomal protein L37Ae