IL_2QEX_071

3D structure

PDB id

2QEX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Negamycin Binds to the Wall of the Nascent Chain Exit Tunnel of the 50S Ribosomal Subunit

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CGUAGUACCUUG*CUUG

Length

16 nucleotides

Bulged bases

2QEX|1|0|G|1979, 2QEX|1|0|U|1985, 2QEX|1|0|U|2004

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2QEX_071 not in the Motif Atlas

Geometric match to IL_4V9F_071

Geometric discrepancy: 0.0462

The information below is about IL_4V9F_071

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_04332.3

Basepair signature

cWW-L-R-L-cWW-L-L-R-L-R-L

Number of instances in this motif group

2

Unit IDs

2QEX|1|0|C|1975
2QEX|1|0|G|1976
2QEX|1|0|U|1977
2QEX|1|0|A|1978
2QEX|1|0|G|1979
2QEX|1|0|U|1980
2QEX|1|0|A|1981
2QEX|1|0|C|1982
2QEX|1|0|C|1983
2QEX|1|0|U|1984
2QEX|1|0|U|1985
2QEX|1|0|G|1986
*
2QEX|1|0|C|2002
2QEX|1|0|U|2003
2QEX|1|0|U|2004
2QEX|1|0|G|2005

Current chains

Chain 0

23S ribosomal RNA

Nearby chains