IL_2QEX_089
3D structure
- PDB id
- 2QEX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Negamycin Binds to the Wall of the Nascent Chain Exit Tunnel of the 50S Ribosomal Subunit
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- CUGAC*GGAAAAGAG
- Length
- 14 nucleotides
- Bulged bases
- 2QEX|1|0|G|2815
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_2QEX_089 not in the Motif Atlas
- Geometric match to IL_4WF9_099
- Geometric discrepancy: 0.2683
- The information below is about IL_4WF9_099
- Detailed Annotation
- tSH-tHS-tHW
- Broad Annotation
- tSH-tHS-tHW
- Motif group
- IL_04638.4
- Basepair signature
- cWW-tSH-tHW-tHS-L-cWW-L-L
- Number of instances in this motif group
- 6
Unit IDs
2QEX|1|0|C|2672
2QEX|1|0|U|2673
2QEX|1|0|G|2674
2QEX|1|0|A|2675
2QEX|1|0|C|2676
*
2QEX|1|0|G|2809
2QEX|1|0|G|2810
2QEX|1|0|A|2811
2QEX|1|0|A|2812
2QEX|1|0|A|2813
2QEX|1|0|A|2814
2QEX|1|0|G|2815
2QEX|1|0|A|2816
2QEX|1|0|G|2817
Current chains
- Chain 0
- 23S ribosomal RNA
Nearby chains
- Chain B
- 50S ribosomal protein L3P
- Chain J
- 50S ribosomal protein L13P
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