IL_2QEX_097

3D structure

PDB id

2QEX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Negamycin Binds to the Wall of the Nascent Chain Exit Tunnel of the 50S Ribosomal Subunit

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

UGUGCG*UUAAG

Length

11 nucleotides

Bulged bases

2QEX|1|0|A|2890

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2QEX_097 not in the Motif Atlas

Homologous match to IL_4V9F_099

Geometric discrepancy: 0.0612

The information below is about IL_4V9F_099

Detailed Annotation

tHS double platform

Broad Annotation

No text annotation

Motif group

IL_48489.1

Basepair signature

cWW-tSH-L-tHH-L-cWW

Number of instances in this motif group

8

Unit IDs

2QEX|1|0|U|2864
2QEX|1|0|G|2865
2QEX|1|0|U|2866
2QEX|1|0|G|2867
2QEX|1|0|C|2868
2QEX|1|0|G|2869
*
2QEX|1|0|U|2888
2QEX|1|0|U|2889
2QEX|1|0|A|2890
2QEX|1|0|A|2891
2QEX|1|0|G|2892

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain B

50S ribosomal protein L3P

Chain U

50S ribosomal protein L24e