IL_2QWY_009

3D structure

PDB id

2QWY (explore in PDB, NAKB, or RNA 3D Hub)

Description

SAM-II riboswitch bound to S-adenosylmethionine

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CA*UAG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_92540.1

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

32

Unit IDs

2QWY|1|C|C|23
2QWY|1|C|A|24
*
2QWY|1|C|U|40
2QWY|1|C|A|41
2QWY|1|C|G|42

Current chains

Chain C

SAM-II riboswitch

Nearby chains