IL_2R8S_003

3D structure

PDB id

2R8S (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution structure of a specific synthetic FAB bound to P4-P6 RNA ribozyme domain

Experimental method

X-RAY DIFFRACTION

Resolution

1.95 Å

Loop

Sequence

CAACAGC*GACAUG

Length

13 nucleotides

Bulged bases

2R8S|1|R|A|125, 2R8S|1|R|U|199

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_68405.1

Basepair signature

cWW-cSS-L-tWH-tHW-cWW-cWW

Number of instances in this motif group

1

Unit IDs

2R8S|1|R|C|121
2R8S|1|R|A|122
2R8S|1|R|A|123
2R8S|1|R|C|124
2R8S|1|R|A|125
2R8S|1|R|G|126
2R8S|1|R|C|127
*
2R8S|1|R|G|195
2R8S|1|R|A|196
2R8S|1|R|C|197
2R8S|1|R|A|198
2R8S|1|R|U|199
2R8S|1|R|G|200

Current chains

Chain R

P4-P6 RNA RIBOZYME DOMAIN

Nearby chains

Chain H

Fab heavy chain

Chain L

Fab light chain