IL_2R8S_007

3D structure

PDB id

2R8S (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution structure of a specific synthetic FAB bound to P4-P6 RNA ribozyme domain

Experimental method

X-RAY DIFFRACTION

Resolution

1.95 Å

Loop

Sequence

CUAAG*UAUG

Length

9 nucleotides

Bulged bases

2R8S|1|R|U|249

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

Receptor of 11-nt loop-receptor motif

Broad Annotation

Loop-receptor motif

Motif group

IL_53448.1

Basepair signature

cWW-tWH-cSH-cWW

Number of instances in this motif group

11

Unit IDs

2R8S|1|R|C|223
2R8S|1|R|U|224
2R8S|1|R|A|225
2R8S|1|R|A|226
2R8S|1|R|G|227
*
2R8S|1|R|U|247
2R8S|1|R|A|248
2R8S|1|R|U|249
2R8S|1|R|G|250

Current chains

Chain R

P4-P6 RNA RIBOZYME DOMAIN

Nearby chains