IL_2UU9_029
3D structure
- PDB id
- 2UU9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a Valine-ASL with cmo5U in position 34 bound to an mRNA with a GUG-codon in the A-site and paromomycin.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- GAGAG*UGGU
- Length
- 9 nucleotides
- Bulged bases
- 2UU9|1|A|A|665
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_2UU9_029 not in the Motif Atlas
- Homologous match to IL_4LFB_029
- Geometric discrepancy: 0.0703
- The information below is about IL_4LFB_029
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_15225.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 39
Unit IDs
2UU9|1|A|G|662
2UU9|1|A|A|663
2UU9|1|A|G|664
2UU9|1|A|A|665
2UU9|1|A|G|666
*
2UU9|1|A|U|740
2UU9|1|A|G|741
2UU9|1|A|G|742
2UU9|1|A|U|743
Current chains
- Chain A
- 16S RRNA
Nearby chains
- Chain F
- 30S RIBOSOMAL PROTEIN S6
- Chain O
- 30S RIBOSOMAL PROTEIN S15
- Chain R
- 30S RIBOSOMAL PROTEIN S18
Coloring options: