IL_2UU9_048
3D structure
- PDB id
- 2UU9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a Valine-ASL with cmo5U in position 34 bound to an mRNA with a GUG-codon in the A-site and paromomycin.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- GAUG*CUAAUC
- Length
- 10 nucleotides
- Bulged bases
- 2UU9|1|A|U|1257, 2UU9|1|A|U|1278, 2UU9|1|A|A|1280, 2UU9|1|A|U|1281
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_2UU9_048 not in the Motif Atlas
- Homologous match to IL_4LFB_052
- Geometric discrepancy: 0.374
- The information below is about IL_4LFB_052
- Detailed Annotation
- 180 degree turn
- Broad Annotation
- No text annotation
- Motif group
- IL_08849.1
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
2UU9|1|A|G|1255
2UU9|1|A|A|1256
2UU9|1|A|U|1257
2UU9|1|A|G|1258
*
2UU9|1|A|C|1277
2UU9|1|A|U|1278
2UU9|1|A|A|1279
2UU9|1|A|A|1280
2UU9|1|A|U|1281
2UU9|1|A|C|1282
Current chains
- Chain A
- 16S RRNA
Nearby chains
- Chain C
- 30S RIBOSOMAL PROTEIN S3
- Chain J
- 30S RIBOSOMAL PROTEIN S10
- Chain N
- 30S RIBOSOMAL PROTEIN S14
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