IL_2UUA_053

3D structure

PDB id

2UUA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a Valine-ASL with cmo5U in position 34 bound to an mRNA with a GUC-codon in the A-site and paromomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

2UUA|1|A|C|1400, 2UUA|1|A|A|1503

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2UUA_053 not in the Motif Atlas

Homologous match to IL_4LFB_056

Geometric discrepancy: 0.0978

The information below is about IL_4LFB_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_18228.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

5

Unit IDs

2UUA|1|A|C|1399
2UUA|1|A|C|1400
2UUA|1|A|G|1401
*
2UUA|1|A|C|1501
2UUA|1|A|A|1502
2UUA|1|A|A|1503
2UUA|1|A|G|1504

Current chains

Chain A

16S RRNA

Nearby chains

Chain X

5'-R(*GP*UP*CP*AP*AP*AP)-3'