IL_2UUB_046

3D structure

PDB id

2UUB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a Valine-ASL with cmo5U in position 34 bound to an mRNA with a GUU-codon in the A-site and paromomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CCAGCG*CGG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2UUB_046 not in the Motif Atlas

Homologous match to IL_4LFB_066

Geometric discrepancy: 0.3119

The information below is about IL_4LFB_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_66997.1

Basepair signature

cWW-cWS-L-R-cWW-L

Number of instances in this motif group

3

Unit IDs

2UUB|1|A|C|1128
2UUB|1|A|C|1129
2UUB|1|A|A|1130
2UUB|1|A|G|1131
2UUB|1|A|C|1132
2UUB|1|A|G|1133
*
2UUB|1|A|C|1141
2UUB|1|A|G|1142
2UUB|1|A|G|1143

Current chains

Chain A

16S RRNA

Nearby chains

Chain I

30S RIBOSOMAL PROTEIN S9