IL_2UUC_020
3D structure
- PDB id
- 2UUC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a Valine-ASL with cmo5U in position 34 bound to an mRNA with a GUA-codon in the A-site and paromomycin.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- CGGCCAAC*GG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_2UUC_020 not in the Motif Atlas
- Homologous match to IL_4LFB_020
- Geometric discrepancy: 0.0586
- The information below is about IL_4LFB_020
- Detailed Annotation
- SSU/LSU pseudoknot
- Broad Annotation
- No text annotation
- Motif group
- IL_41203.4
- Basepair signature
- cWW-L-cWW-L-L-R-cSH
- Number of instances in this motif group
- 11
Unit IDs
2UUC|1|A|C|504
2UUC|1|A|G|505
2UUC|1|A|G|506
2UUC|1|A|C|507
2UUC|1|A|C|508
2UUC|1|A|A|509
2UUC|1|A|A|510
2UUC|1|A|C|511
*
2UUC|1|A|G|540
2UUC|1|A|G|541
Current chains
- Chain A
- 16S RRNA
Nearby chains
- Chain D
- 30S RIBOSOMAL PROTEIN S4
- Chain L
- 30S RIBOSOMAL PROTEIN S12
Coloring options: